DNA Damage Atlas

GSM5086324-Sample_7_U2OS50_KBr_1h_hoGG1_repair

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13576542


Source Project ID:   

GSE166843

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

KBrO3 + hOGG1 repair


Treatment Dose:   

50mM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

RADD-Seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04511344917.4501/
chr9_gl000199_random5696557495571625.15172/
chr19_gl000208_random08501984.76142/
chrUn_gl00022604391923.88175/
rDNA1350014491138892.85291/
rDNA2833628772285732.66486/
chr9_gl000199_random6846168871686772.59769/
chrUn_gl0002201427331431981430072.54031/
chrUn_gl0002201297931302201300072.53962/
chr41679442171679454921679447942.47563/
Download the Full Peak List


Visualization

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Motif Analysis

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