DNA Damage Atlas

GSM5100374-XRCC1_ChIP-seq_in_iNeuron

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764815


Source Project ID:   

GSE167253

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

ChIP-seq (anti-XRCC1)


Others:   

control: GSM5100376-input_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA55473938.3075//
rDNA6429660436.9127//
rDNA133901453228.612//
rDNA7081751624.9421//
chrUn_gl00022011877211900024.2061//
rDNA2870314123.8366//
chr1010312457410312473223.0222//
rDNA9043921422.3723//
rDNA1594220721.6896//
rDNA126141318121.4583//
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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