DNA Damage Atlas


GSM5100378-XRCC1_ChIP-seq_in_rat_primary_neuron




Basic Information

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Sample ID:   

SRR13764819


Source Project ID:   

GSE167253

Cell Type:   

Rat cortical neurons


Organism:   

Rattus norvegicus


Treatment:   

Aphidicolin


Treatment Time:   

2hrs after plating


Treatment Dose:   

5uM


Harvested Time:   

harvested day: day8 post plating


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

ChIP-seq (anti-XRCC1)


Others:   

control: GSM5100466-input_for_SAR-seq_in_primary_neuron


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
144664494946645189/51.5798/
47744785377448493/49.4441/
11191296511913158/43.6959/
195633763956339340/43.3016/
34154242023/41.9823/
133350496233505145/41.8558/
144632950146329675/39.5742/
1180644820180644989/37.0825/
11190555311905737/34.48/
MT1200516222/32.3826/
Download the Full Peak List



Motif Analysis

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