DNA Damage Atlas


GSM5100380-PAR_ChIP-seq_in_preB_wih_AsisI_induction




Basic Information

Manual

Sample ID:   

SRR13764821


Source Project ID:   

GSE167253

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Imatinib + Doxycycline + 4-Hydroxytamoxifen


Treatment Time:   

24hrs + 24 hrs + 18hrs


Treatment Dose:   

3uM imatinib + 3ug/mL Doxycycline + 1uM 4-OHT


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

ChIP-seq (anti-PAR)


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr68307841583078418/7697/
chr119820368398203686/6348/
chr115335176253351765/5793/
chr139724142697241429/5713/
chr188408771584087718/5713/
chr115161999651619999/5634/
chr3116808386116808389/5555/
chr15284527952845282/5079/
chr1133131826133131829/4840/
chr64759481147594814/4840/
Download the Full Peak List




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