DNA Damage Atlas


GSM5100381-PARGi_PAR_ChIP-seq_in_preB_wih_AsisI_induction




Basic Information

Manual

Sample ID:   

SRR13764822


Source Project ID:   

GSE167253

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Treatment:   

Imatinib + Doxycycline + 4-Hydroxytamoxifen + PARG inhibitor


Treatment Time:   

24hrs + 24 hrs + 18hrs + 20mins


Treatment Dose:   

3uM imatinib + 3ug/mL Doxycycline + 1uM 4-OHT + 10uM PARG inhibitor


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

ChIP-seq (anti-PAR)


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr115161999651619999/22291/
chr1133131826133131829/19583/
chr3116808386116808389/18890/
chr15284527952845282/18387/
chr23197470331974706/18324/
chr1131827650131827653/18261/
chr3139074689139074692/18261/
chr97811344578113448/17757/
chr1130716976130716979/17568/
chr38790686187906864/17064/
Download the Full Peak List




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