DNA Damage Atlas

GSM5100382-ddN_S1-END-seq_in_iNeuron

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764823


Source Project ID:   

GSE167254

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddN


Treatment Time:   

18hrs


Treatment Dose:   

5uM  each


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

7days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002405


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr110587089810587146310587116518.5952-
chr111977029511977077211977029817.9534+
chr1311260937711261062611261006319.3989-
chr1476660149766610697666052421.1597-
chr1673264749732676717326587917.0487-
chr1750833808508342385083403220.6444+
chr1855167550551683395516786418.0547-
chr213757068513757127813757099018.2456-
chr329750209297509762975057417.0203+
chr9_gl000199_random34176351753451723.919-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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