DNA Damage Atlas


GSM5100383-ddN_END-seq_in_iNeuron




Basic Information

Manual

Sample ID:   

SRR13764824


Source Project ID:   

GSE167254

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

ddN


Treatment Time:   

18hrs


Treatment Dose:   

5uM  each


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

7days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002499



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr19_gl000208_random277917513.4504-
chr6_cox_hap27086977090197090197.62798-
chr9_gl000199_random33819353753450230.7197-
chr9_gl000199_random1289851318421313259.8446-
chrUn_gl00021240481416494091710.9476-
chrUn_gl0002161166712065118727.19995-
chrUn_gl00021680480811738070711.4322-
chrUn_gl0002281149841198721185666.90196-
chrX34035862340360643403606411.6826-
rDNA63612117413.6162+
Download the Full Peak List



Motif Analysis

Manual





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