DNA Damage Atlas

GSM5100384-NT_for_ddN_S1-END-seq_in_iNeuron

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764825


Source Project ID:   

GSE167254

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

7days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005456


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr195298459530476953013512.3028+
chr1231993157319937063199346913.9979+
chr248724710487250384872483612.2157+
chr2130671634306718353067163526.8643+
chr710147054410147079310147056915.9657+
chr9_gl000199_random33827350773445033.0182+
chrUn_gl00021240540413574091527.184-
chrUn_gl00021680296811498071614.367-
chrUn_gl00022015691016074715905913.6445-
rDNA37491647814.2384+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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