DNA Damage Atlas

GSM5100385-END-seq_in_iNeuron

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764826


Source Project ID:   

GSE167254

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

7days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001152


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr19_gl000208_random074317214.7604+
chr41708814170902817090249.91553-
chr9_gl000199_random33829354233448548.4414-
chr9_gl000199_random12881413175813132711.2742-
chrUn_gl0002124031844329409177.08338-
chrUn_gl0002146296266199650755.9756+
chrUn_gl0002167535976491758284.99206-
chrUn_gl00021680134811948070613.0434-
chrUn_gl0002161317521324331322534.85423-
chrUn_gl0002281149871197561185666.40715-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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