DNA Damage Atlas


GSM5100386-NtBspQ1_S1-END-seq_in_iNeuron




Basic Information

Manual

Sample ID:   

SRR13764827


Source Project ID:   

GSE167254

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

7days


Targeted break:   

Nt.BspQI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.031816



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr112371621623716217/641289/
chr52933041629330417/636060/
chr25545015455450155/629180/
chr107864491778644918/602327/
chr1951028505102851/582708/
chr1111933036111933037/541740/
chr2052251045225105/466921/
chr7103794119103794120/432952/
chr56570594865705949/386755/
chr8107670647107670648/386008/
Download the Full Peak List




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