DNA Damage Atlas

GSM5100387-NT_for_NtBspQ1_S1-END-seq_in_iNeuron

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR13764828


Source Project ID:   

GSE167254

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

7days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.008661


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3123719580123719581/393.164/
chrM35583559/393.164/
chrM76367637/393.164/
chr11124019167124019168/353.847/
chr117380054273800543/314.531/
chr123984147139841472/314.531/
chr19185284891852849/314.531/
chr3146137913146137914/314.531/
chr3184741620184741621/314.531/
chr5165291591165291592/314.531/
Download the Full Peak List


Visualization

Manual





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