DNA Damage Atlas


GSM5100388-Nickase_with_DOX_S1-END-seq_in_MCF10A




Basic Information

Manual

Sample ID:   

SRR13764829


Source Project ID:   

GSE167254

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

Palbociclib + Doxycycline


Treatment Time:   

48hrs + 24hrs


Treatment Dose:   

5uM Palbociclib + 3ug/mL Doxycycline


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Targeted break:   

Cas9D10A


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001469




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