DNA Damage Atlas

GSM5100401-SAR-seq_in_iNeuron_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764930


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr720169859201702632017007023.7102/
chr1110266287910266359310266316422.1749/
chr850267180502675705026738821.3135/
chr418355787018355843518355816220.877/
chr462883813628845116288418420.8686/
chr544881381448819374488160420.7878/
chr223699069523699123323699090020.6004/
chr123379864023379904923379885720.517/
chr1942665840426663714266613820.4248/
chr2131460395314610263146071220.0734/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr462883886628844016288418428.9856
chr720169859201702632017007025.7375
chr1090651117906515759065134325.234
chr418355790918355843518355816222.8603
chr1110266287910266356510266316422.8591
chr118032302318032356818032338522.63
chr616310598616310651216310625022.5789
chr1361998492619992006199890822.2939
chr1012698123412698189412698160222.2362
chr123379864023379904923379885722.1677
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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