DNA Damage Atlas

GSM5100402-SAR-seq_in_iNeuron_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764931


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr118032302318032356818032325824.3335/
chr1090651117906515849065132322.8417/
chr1361998482619992006199890022.4858/
chr1012698118112698189412698159421.2956/
chr418355790918355844218355816521.2754/
chr318412057184127431841236421.1532/
chr1570168315701694327016910020.304/
chr462883792628845386288417719.9671/
chr1942665877426663184266614519.8301/
chr1856156016561564885615626319.7493/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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