DNA Damage Atlas

GSM5100405-NT_SAR-seq_for_HU_in_iNeuron

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764934


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM056062823138.251/
chr132486593248969324882929.7833/
chr1436544338365448233654459628.0163/
chr1090651167906515199065134026.7245/
chr414378777414378827514378805725.9046/
chr118032296018032362918032334824.8677/
chr1552436205524365305243635723.8526/
chr812780498512780537512780524523.2272/
chr1427554622275550612755493023.0156/
chr614949812314949852214949832222.9216/
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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