DNA Damage Atlas

GSM5100406-POLAi_SAR-seq_in_iNeuron_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13764935


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

POLA inhibitor


Treatment Time:   

14hrs


Treatment Dose:   

1uM Adarotene


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM055982819200.416/
chr418355792718355834518355809834.1627/
chr1013112671713112708213112689333.5838/
chr790342953903431699034305932.7631/
chr1065990788659911456599100131.1505/
chr1090651101906515969065134431.1462/
chr462883874628843596288418930.4856/
chr1012698125812698178212698158029.4225/
chr122932075022932102522932089027.1125/
chr117784955817784993117784970427.1039/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1090651112906515469065134435.5239/
chr418355792718355834518355809834.1627/
chr1013112671713112708213112689333.5838/
chr790342953903431699034305932.7631/
chr462883906628843596288418932.6391/
chr1065990788659911456599100131.1505/
chr1012698126012698178212698158029.5352/
chr1942665926426662884266613128.2766/
chr122932075022932102522932089027.1125/
chr117784955817784993117784970427.1039/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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