DNA Damage Atlas

GSM5100418-sgControl_SAR-seq_for_sgXRCC1_in_iNeuron_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13764947


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

sgControl


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1593737316937376719373749833.5508/
chr1013176063913176139713176107431.9072/
chr118032297218032355918032336230.0217/
chr190729045907296679072930528.9185/
chr1591129180911296049112945728.3775/
chr9_gl000199_random44208443854429528.1524/
chr879485185794857707948539827.4235/
chr883485104834854468348524926.6526/
chr564578856458522645803625.5664/
chr1014843240148435981484340824.443/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1593737316937376719373749833.5508/
chr1013176063913176139713176107431.9072/
chr491464961914654159146523431.3209/
chr132486593248966324881630.8788/
chr118032297218032355918032336230.0217/
chr190729045907296679072930528.9185/
chr1591129180911296049112945728.3775/
chr1090651077906515149065133028.3677/
chr1918823792188241921882397627.9533/
chr1012698134012698176712698159627.8935/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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