DNA Damage Atlas

GSM5100424-sgControl_SAR-seq_for_sgPOLB_in_iNeuron_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764953


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

sgControl


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM055942786210.602/
chr462884022628843026288417740.5349/
chr9_gl000199_random34293345543446635.8118/
chr1013112675013112708713112688635.66/
chr1013176071513176129813176105234.5841/
chr9_gl000199_random44213443724429134.4314/
chrUn_gl00021240801409614088032.5472/
chr720169918201701992017005132.3125/
chr414378786414378823214378806932.2932/
chr1090651190906516109065132730.2025/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM055942786210.602/
chr462884022628843026288417740.5349/
chr9_gl000199_random34293345543446635.8118/
chr1013112675013112708713112688635.66/
chr1593737346937376779373749634.6928/
chr1013176071513176129813176105234.5841/
chr594532071945324609453225032.9526/
chr720169918201701992017005132.3125/
chr414378786414378823214378806932.2932/
chr118032299818032351418032337831.3115/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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