DNA Damage Atlas

GSM5100425-sgControl_SAR-seq_for_sgPOLB_in_iNeuron_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764954


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

sgControl


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM055962826130.832/
chr1593737346937376779373748531.6378/
chr118032299418032351418032336028.1302/
chr1090651196906516599065132925.1311/
chr1434507519345078123450767224.6783/
chr1013176061113176136313176106324.2042/
chr132486713248962324884323.4199/
chr190931100909313559093122822.8151/
chr2131460480314609323146072322.8006/
chr594532071945326019453224822.4246/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM055942826130.878/
chr462884022628843026288418035.3226/
chr133899055338992453389914434.5571/
chr414378786414378823214378805933.6513/
chr720169918201701992017005533.1265/
chr1593737346937376779373748531.6378/
chr1013176071513176129813176106330.6502/
chr594532071945324609453224830.1254/
chr1383715734837159878371589029.237/
chr1427554721275550242755493028.5269/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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