DNA Damage Atlas

GSM5100430-NT_sgControl_for_sgPOLB_and_sgPNKP_SAR-seq_iNeuron_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764959


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

sgControl


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1090651177906515159065134131.7749/
chr1013176076013176140913176106229.3045/
chr1942665932426663054266612829.0933/
chr1110266289410266351910266316328.6398/
chr1567868778678691616786897727.4574/
chr2134905771349060673490590327.2127/
chr118032298018032366618032336826.9085/
chr170851307085447708526026.4687/
chr1023286885232873702328711125.8349/
chr616310603016310652516310625325.313/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr955818355868555838032.76/
chr1090651177906515159065134131.7749/
chr413104065913104100413104081530.8059/
chr1110266293110266351910266316330.442/
chr118032298018032359318032336830.113/
chr1942665932426662964266612829.8126/
chr170851307085413708526029.6486/
chr1013176076013176140913176106229.3045/
chr150744177507445715074442128.6784/
chr616310603016310647216310625328.0951/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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