DNA Damage Atlas

GSM5100431-NT_sgControl_for_sgPOLB_and_sgPNKP_SAR-seq_iNeuron_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764960


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

sgControl


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr413104065913104100413104081833.201/
chr150744177507445715074440928.7924/
chr955818355868555835327.6442/
chr616310599916310647216310625025.3806/
chr318412100184127551841235925.0543/
chrUn_gl00021240785409714087724.2777/
chr1942665865426662964266614223.5097/
chr177163857717271771683822.9972/
chr118032288018032359318032325522.7073/
chr170850267085413708525722.1984/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr413104065913104100413104081833.201/
chr170851307085413708525729.9669/
chr1110266293110266351910266316429.7822/
chr150744177507445715074440928.7924/
chr1090651177906515159065133828.3491/
chr1942665932426662964266614227.8371/
chr955818355868555835327.6442/
chr114048454140489021404874427.2887/
chr616310603016310647216310625027.1607/
chr614055008714055045614055028426.5645/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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