DNA Damage Atlas

GSM5100432-APH_sgControl_for_sgPOLB_SAR-seq_iNeuron_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13764961


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Time:   

24hrs


Treatment Dose:   

50uM


Genotype:   

sgControl


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr747516214752750475190419.5914/
chr516504940016505026116504986717.8212/
chr121669114321669210021669148017.6671/
chr1570354078703553767035458916.7729/
chr517886338217886391617886356316.6984/
chr138723714387244823872408516.5866/
chr1012272239312272288812272263616.2594/
chr1311260976611261059011261001115.7404/
chr1013170778213170872313170815615.4447/
chr1689225297892259718922558315.1199/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr216397864163982671639808821.1207/
chr747516214752679475190420.9061/
chr1211743432711743493711743471820.6929/
chr1775695161756956477569537819.6582/
chr319345477019345563519345508219.2784/
chr1574520930745214597452119719.2643/
chr1570354233703553767035458918.9968/
chr138723740387244163872408518.7583/
chr516504943116505025316504986718.6668/
chr1223963662396663239651818.326/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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