DNA Damage Atlas

GSM5100433-APH_sgControl_for_sgPOLB_SAR-seq_iNeuron_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764962


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Time:   

24hrs


Treatment Dose:   

50uM


Genotype:   

sgControl


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr118032294618032370118032334417.302/
chr711751562611751602211751584516.1145/
chr791259759912606619126023115.8139/
chr594531886945326819453225915.4871/
chr2051841732518423225184206714.8877/
chr719980537199811281998099214.8625/
chr1535396518353974193539693414.8316/
chr1574608291746089807460873414.8188/
chr1337918134379187143791843914.3677/
chr371065315710659557106549314.3111/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr118032297118032348318032334425.0738/
chr1013176071413176140513176105721.512/
chr791259979912606619126023120.0346/
chr879485052794857327948539518.6583/
chr719980671199811281998099218.5633/
chr614949812514949850814949833417.6416/
chr1110270919310270961710270937317.5292/
chr1574608392746089807460873417.3642/
chr1337918134379186143791843917.2046/
chr773684314736845467368442816.5035/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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