DNA Damage Atlas

GSM5100440-CPT_sgPNKP_SAR-seq_iNeuron_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764969


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

Camptothecin


Treatment Time:   

2hrs


Treatment Dose:   

25uM


Genotype:   

sgPNKP


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM056062845113.688/
chr1010137193710137254010137223617.276/
chr120162917320162955420162929316.7201/
chr632259603227281322658816.5096/
chr483339389833399138333965215.8759/
chr1165266378652738006526750215.7727/
chr1675695366756960177569576115.7719/
chr1249580407495822944958085115.6881/
chr1213248609113248630913248620215.1266/
chr913193989813194047613194024214.7816/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1010137199010137254010137223618.9408/
chr120162917320162955420162929316.7201/
chr632259663227281322658816.5849/
chr1675695366756959957569576116.3236/
chr1249580407495822564958085116.0105/
chr483339389833399138333965215.8759/
chr1165266378652738006526750215.7727/
chr118105945818106154018106067515.7306/
chr2227053558270545632705427015.6603/
chr2239918400399197563991908715.6413/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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