DNA Damage Atlas


GSM5100441-CPT_sgPNKP_SAR-seq_iNeuron_rep2




Basic Information

Manual

Sample ID:   

SRR13764970


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

Camptothecin


Treatment Time:   

2hrs


Treatment Dose:   

25uM


Genotype:   

sgPNKP


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1010137199010137260210137223317.5328/
chr1675695358756959957569575016.7374/
chr1249580395495822564958082815.4978/
chr632259663227332322659314.6596/
chr2239918384399197563991908814.2966/
chr1165266313652740286526668614.2713/
chr118105945818106154018106067314.2138/
chr1110827226108298771082751313.3028/
chr1379173616791752467917413012.8303/
chr1913264751132655661326537912.7465/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1010137199010137254010137223319.385/
chr1675695366756959957569575016.9503/
chr120162917320162955420162929416.1444/
chr1213248609113248630913248620915.9889/
chr1249580407495822564958082815.5984/
chr1249426434494270294942665615.277/
chr632259663227281322659315.0722/
chr1470251873702523577025210014.968/
chr1165266378652738006526668614.7794/
chr2034250795342516703425122714.6062/
Download the Full Merged Peak List



Motif Analysis

Manual





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