DNA Damage Atlas

GSM5100441-CPT_sgPNKP_SAR-seq_iNeuron_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764970


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

Camptothecin


Treatment Time:   

2hrs


Treatment Dose:   

25uM


Genotype:   

sgPNKP


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1010137199010137260210137223317.5328/
chr1675695358756959957569575016.7374/
chr1249580395495822564958082815.4978/
chr632259663227332322659314.6596/
chr2239918384399197563991908814.2966/
chr1165266313652740286526668614.2713/
chr118105945818106154018106067314.2138/
chr1110827226108298771082751313.3028/
chr1379173616791752467917413012.8303/
chr1913264751132655661326537912.7465/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1010137199010137254010137223319.385/
chr1675695366756959957569575016.9503/
chr120162917320162955420162929416.1444/
chr1213248609113248630913248620915.9889/
chr1249580407495822564958082815.5984/
chr1249426434494270294942665615.277/
chr632259663227281322659315.0722/
chr1470251873702523577025210014.968/
chr1165266378652738006526668614.7794/
chr2034250795342516703425122714.6062/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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