DNA Damage Atlas

GSM5100443-CPT_sgControl_for_sgPNKP_SAR-seq_iNeuron_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764972


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

Camptothecin


Treatment Time:   

2hrs


Treatment Dose:   

25uM


Genotype:   

sgControl


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1461758291617587586175848115.1879/
chr131956053319568103195645314.6822/
chr1079006671790071977900691814.5964/
chr635175963518116351786713.4993/
chr662479016248238624806813.0186/
chr150744037507447355074439412.8853/
chr1436560183365610113656059712.7167/
chr491464875914656149146522512.6651/
chr1299984142999844939998429012.4994/
chr215242331415242425915242366912.3803/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1436458981364592923645912720.4551/
chr1079006671790071297900691816.6039/
chr850759925076347507616315.8601/
chr150744058507446295074439415.7512/
chr491465027914656149146522515.6955/
chr131956053319567753195645315.3939/
chr1461758291617587586175848115.1879/
chr2044824250448246444482441515.0325/
chr1012698131012698174312698160315.0295/
chr1273230450732306697323055715.0249/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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