DNA Damage Atlas

GSM5100445-strandness_SAR-seq_in_iNeuron_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764974


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM056022850212.727/
chr876420779764210577642094535.7433/
chr1436544413365448143654462830.7128/
chr319345489319345552519345513230.1164/
chr170851607085434708526327.5819/
chr1090651175906514459065131327.4722/
chr317406612174069031740679327.4134/
chr1865789923657901746579004427.3214/
chr1146156536461567534615663526.4427/
chr2039339977393403203934013326.1136/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr876420779764210577642094534.1817
chr170851607085434708526332.3177
chr1110270924010270959510270935429.888
chr319345489319345552519345513229.7636
chr1013484296713484332213484313329.2655
chr318412221184126701841234729.2149
chr1436544451365448143654462828.3123
chr1865789923657901746579004428.1941
chr334270801342710323427091227.9712
chr1755900838559012045590098427.4214
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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