DNA Damage Atlas

GSM5100447-SAR-seq_in_Muscle_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13764976


Source Project ID:   

GSE167257

Cell Type:   

iMuscle


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


Harvested Time:   

day9


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201427351433451430048.29925/
chrUn_gl0002266810721370117.33718/
rDNA1995020321201347.00397/
chrUn_gl00022606711936.94386/
chr9_gl000199_random5696557481571546.77228/
chr19_gl000208_random07722536.61573/
chr9_gl000199_random3418935005344685.70997/
chr9_gl000199_random4394944475442915.70663/
rDNA1334515042138724.72565/
rDNA4148042337421394.60036/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022605101939.0481/
chrUn_gl0002201427351433231430048.60977/
chr9_gl000199_random4410844475442917.93483/
chrUn_gl0002266810721370117.33718/
rDNA1995020320201347.0229/
chr9_gl000199_random5696557481571546.77228/
chr19_gl000208_random07722536.61573/
chrUn_gl0002201297911302491299905.77134/
chr9_gl000199_random3418935005344685.70997/
rDNA1334515000138724.84558/
Download the Full Merged Peak List


Visualization

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Motif Analysis

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