DNA Damage Atlas

GSM5100448-SAR-seq_in_Muscle_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13764977


Source Project ID:   

GSE167257

Cell Type:   

iMuscle


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


Harvested Time:   

day9


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022605101967.25982/
chr9_gl000199_random4410844479442926.9091/
chrUn_gl0002201427281433231430126.76121/
chr19_gl000208_random08291986.61347/
chrUn_gl0002266810721370105.65377/
rDNA1330215000138695.59805/
rDNA1994920320201335.56566/
chr9_gl000199_random5685157502571535.24993/
chrUn_gl0002201297911302491299804.97482/
rDNA4508466474.40518/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022605101967.25982/
chr19_gl000208_random07721987.10177/
chr9_gl000199_random4410844475442926.9844/
chrUn_gl0002201427351433231430126.8417/
chr9_gl000199_random5696557481571536.62345/
rDNA1334515000138695.74349/
chrUn_gl0002266810721370105.65377/
rDNA1995020320201335.58071/
chr9_gl000199_random3418935005344675.10456/
chrUn_gl0002201297911302491299804.97482/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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