DNA Damage Atlas

GSM5100451-2hrs_SAR-seq_in_iNeuron_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR13764980


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

2hrs EdU


Treatment Time:   

2hrs


Treatment Dose:   

20uM


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM056063170317.508/
chrUn_gl00021240787409904088749.2427/
chr9_gl000199_random34281345683446846.2033/
chr9_gl000199_random44209443864429642.6452/
rDNA28433286802857134.6892/
chrUn_gl0002267733517232.4195/
rDNA41939422944214731.6065/
chrUn_gl00021680595807728068227.6618/
chr9_gl000199_random47309474774739226.715/
chr9_gl000199_random11041311056711048926.4942/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM056043170317.621/
chrUn_gl00021240787409764088752.8903/
chr9_gl000199_random34281345683446846.2033/
chr9_gl000199_random44209443854429642.8875/
chr9_gl000199_random47318474714739229.3341/
chrUn_gl00021680604807728068229.1436/
chr9_gl000199_random11041311056511048926.8428/
chr9_gl000199_random57055573715715626.4691/
chr9_gl000199_random51273516255135824.3416/
chr9_gl000199_random13802613818713810624.0752/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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