DNA Damage Atlas


GSM5100451-2hrs_SAR-seq_in_iNeuron_rep1




Basic Information

Manual

Sample ID:   

SRR13764980


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

2hrs EdU


Treatment Time:   

2hrs


Treatment Dose:   

20uM


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM056063170317.508/
chrUn_gl00021240787409904088749.2427/
chr9_gl000199_random34281345683446846.2033/
chr9_gl000199_random44209443864429642.6452/
rDNA28433286802857134.6892/
chrUn_gl0002267733517232.4195/
rDNA41939422944214731.6065/
chrUn_gl00021680595807728068227.6618/
chr9_gl000199_random47309474774739226.715/
chr9_gl000199_random11041311056711048926.4942/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM056043170317.621/
chrUn_gl00021240787409764088752.8903/
chr9_gl000199_random34281345683446846.2033/
chr9_gl000199_random44209443854429642.8875/
chr9_gl000199_random47318474714739229.3341/
chrUn_gl00021680604807728068229.1436/
chr9_gl000199_random11041311056511048926.8428/
chr9_gl000199_random57055573715715626.4691/
chr9_gl000199_random51273516255135824.3416/
chr9_gl000199_random13802613818713810624.0752/
Download the Full Merged Peak List



Motif Analysis

Manual





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