DNA Damage Atlas

GSM5100453-4hrs_SAR-seq_in_iNeuron_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764982


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

4hrs EdU


Treatment Time:   

4hrs


Treatment Dose:   

20uM


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34279345743446335.5518/
chr9_gl000199_random44200443874429230.5021/
rDNA41907422534214130.3115/
chrUn_gl0002266934917630.228/
chr9_gl000199_random57054573795715524.3441/
chrUn_gl00022668967127700822.3026/
chr715478614515478641915478625122.1601/
chr9_gl000199_random11038811057311047921.8806/
chr9_gl000199_random13801813819613810621.7074/
chr1682497841824981788249801721.2933/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34279345743446335.5518/
rDNA41922422534214131.6852/
chr9_gl000199_random44200443874429230.5021/
chr9_gl000199_random11040611057311047924.239/
chr715478614515478641915478625122.1601/
chr120827960220827996120827980221.526/
chr524617972462150246200121.3707/
chr1682497841824981788249801721.2933/
chr544881390448817674488160620.0102/
chr116606280816606326716606302019.6423/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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