DNA Damage Atlas

GSM5100457-18hrs_SAR-seq_in_iNeuron_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764986


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

18hrs EdU


Treatment Time:   

18hrs


Treatment Dose:   

20uM


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM056062855149.525/
chr2131460476314609503146071426.7038/
chr1755900624559012315590099526.4549/
chr863540509635412156354093924.886/
chr1090651172906515269065133823.7483/
chr1012698123212698182512698158222.7786/
chr912609623612609666612609646222.187/
chr116606280816606326116606301722.1031/
chr580063069800635388006329121.9533/
chr132485293249014324881321.2291/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM056002855149.685/
chr1755900752559012315590099533.3271/
chr614949813614949849014949831430.686/
chr132486553249014324881328.1537/
chr912609630912609666612609646226.7239/
chr2131460476314609503146071426.7038/
chr594532022945325869453223825.2897/
chr1942665929426663104266614625.0405/
chr863540509635412156354093924.886/
chr672511997251629725133924.1641/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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