DNA Damage Atlas

GSM5100459-MMS_SAR-seq_in_iNeuron_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764988


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

MMS


Treatment Time:   

15mins


Treatment Dose:   

0.1mg/ml


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr101317606291317612751317610782.29727/
chr41128045681128053461128048091.8479/
chr41375962137653913762231.76824/
chr51255349191255359971255353281.76385/
chr106759216766056761191.76284/
chr121173885291173892761173890751.73833/
chr57604117610027608061.72636/
chr205695103856951416569512261.71764/
chr78645756864627086460111.7143/
chr21989396531989406301989401771.70885/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr101317606291317612751317610782.29727/
chr12025553622025560152025558252.20163/
chr61494980341494986141494983181.99898/
chr63517532351809235178611.90474/
chr22319601722319607582319603891.89937/
chr101317056921317063581317060131.88012/
chr152936015029360747293604771.86437/
chr19072908590729683907293351.86125/
chr51332053781332059791332057951.85196/
chr152696097026961494269611131.77009/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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