DNA Damage Atlas

GSM5100460-MMS_SAR-seq_in_iNeuron_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764989


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

MMS


Treatment Time:   

15mins


Treatment Dose:   

0.1mg/ml


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr7_gl000195_random8232286203827992.14309/
chr31841193918412713184123941.86191/
chr63517532351809235178541.83817/
chr101317604921317615011317610421.79554/
chr126874517268745929687455021.79494/
chr159367354493674376936740591.78161/
chr31684268071684273671684270341.76464/
chr87948488679485742794853841.73166/
chr102746144274680227464011.68955/
chr167848542378485985784858131.68509/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr101317606291317612751317610422.67701/
chr126874528668745780687455022.58385/
chr83637353936373938363735732.2703/
chr159367357993674341936740591.94527/
chr31438464771438470961438466991.92903/
chr87948495179485742794853841.87395/
chr31841193918412713184123941.86191/
chr63517532351809235178541.83817/
chr46288385062884370628841821.8212/
chr152936015029360747293604721.79321/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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