DNA Damage Atlas


GSM5100460-MMS_SAR-seq_in_iNeuron_rep2




Basic Information

Manual

Sample ID:   

SRR13764989


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

MMS


Treatment Time:   

15mins


Treatment Dose:   

0.1mg/ml


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr7_gl000195_random8232286203827992.14309/
chr31841193918412713184123941.86191/
chr63517532351809235178541.83817/
chr101317604921317615011317610421.79554/
chr126874517268745929687455021.79494/
chr159367354493674376936740591.78161/
chr31684268071684273671684270341.76464/
chr87948488679485742794853841.73166/
chr102746144274680227464011.68955/
chr167848542378485985784858131.68509/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr101317606291317612751317610422.67701/
chr126874528668745780687455022.58385/
chr83637353936373938363735732.2703/
chr159367357993674341936740591.94527/
chr31438464771438470961438466991.92903/
chr87948495179485742794853841.87395/
chr31841193918412713184123941.86191/
chr63517532351809235178541.83817/
chr46288385062884370628841821.8212/
chr152936015029360747293604721.79321/
Download the Full Merged Peak List



Motif Analysis

Manual





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