DNA Damage Atlas

GSM5100462-NT_for_MMS_SAR-seq_in_iNeuron_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR13764991


Source Project ID:   

GSE167257

Cell Type:   

iNeuron


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


Harvested Time:   

day7


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

SAR-seq


Others:   

control: GSM5100403-input_for_SAR-seq_in_iNeuron


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1090651111906515279065133226.6124/
chrUn_gl00021240788409824088425.3074/
chr491464970914654249146522524.3849/
chr462883864628843836288418823.1858/
chr1436544421365448373654460221.9841/
chr583546144835463978354625621.6887/
chr120918630920918672220918654819.5798/
chr1110266282110266357210266317419.4842/
chr2134905738349060783490591019.2535/
chr635175503518045351787019.2535/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr491464996914653819146522528.7552/
chr1090651124906515279065133227.4708/
chr115803207015803243815803222325.6364/
chr462883896628843836288418824.7093/
chr381494465814947118149454524.6538/
chr1110266291510266352710266317423.7522/
chr319345489319345564519345512623.0427/
chr2134905782349060683490591022.8887/
chr1436544421365448253654460222.6371/
chr1361998592619991676199890222.4345/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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