DNA Damage Atlas

GSM5191853-HDF_DA_48h_800M

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14022108,SRR14022109


Source Project ID:   

GSE159807

Cell Type:   

HDF


Organism:   

Homo sapiens


Treatment:   

UVB


Treatment Dose:   

4000 J/m2


Harvested Time:   

repair time: 48 hrs


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Circle-damage-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1333715680141873.24277/
rDNA3750038130377543.20293/
chrUn_gl0002201290211303041299633.17761/
chrUn_gl0002242852469237243.08854/
rDNA2819329428286452.91765/
rDNA3113132633319302.8788/
chr19_gl000208_random78452572.72735/
chrUn_gl0002201251281257501253402.68137/
chrUn_gl0002201426851434061430642.57022/
chrUn_gl0002201361311370991369292.29726/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab