DNA Damage Atlas

GSM5217288-dDSB_Spo11-myc18_rad50S_t4_replicate_1_ChIP

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14093029


Source Project ID:   

GSE171042

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 + ZP591


Genotype:   

rad50S


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Protec-seq


Others:   

antibody: anti-myc antibody; index 1: CGGCTATG; index 2: GGCTCTGA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrIV869058871230/1035.78/
chrXIII511932514333/943.798/
chrXVI344339349806/748.406/
chrV461013462325/686.074/
chrV352794357274/630.639/
chrVII753718756831/621.916/
chrIV12032751205607/604.072/
chrVII269563275770/568.666/
chrXV795301797068/565.695/
chrXII773962775482/565.116/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrIV8691048712308704511058.19/
chrXIII511932514333513224943.798/
chrXVI344580349806345433779.599/
chrV461013462325461699686.074/
chrV352859357274355414639.329/
chrVII753775756798755744639.164/
chrIV120327512056071204669604.072/
chrXII774052775482774904600.542/
chrXV795377797057796304591.628/
chrXII575978578206577467585.096/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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