DNA Damage Atlas

GSM5217290-dDSB_Spo11-myc18_rad50S_t6_ChIP

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14093031


Source Project ID:   

GSE171042

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 + ZP591


Genotype:   

rad50S


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Protec-seq


Others:   

antibody: anti-myc antibody; index 1: TCCGGAGA; index 2: TAATCTTA


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXVI344265351516/1323.68/
chrIV869212871347/1318.7/
chrXIII511967514468/1241.14/
chrV460994462363/979.587/
chrIV12033281205710/975.805/
chrVII394293401920/950.195/
chrVII753785756842/931.23/
chrVII411013412560/912.856/
chrXIII731321733917/845.471/
chrXIII745887747728/797.202/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXVI3442673497173453981728.71/
chrIV8695708712938705721618.23/
chrXIII5120275144245135621292.62/
chrVII3963744018403996751272.07/
chrXIII7313217331297322221181.67/
chrVII7541317568177557931051.9/
chrV3534513571393554771047.91/
chrIV1203452120570212046721030.91/
chrV4610314623514616781014.91/
chrXI283008286714285053981.661/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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