DNA Damage Atlas

GSM5217292-dDSB_Spo11-myc18_rad50S_t6_replicate_1_ChIP

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14093033


Source Project ID:   

GSE171042

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 + ZP591


Genotype:   

rad50S


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

Protec-seq


Others:   

antibody: anti-myc antibody; index 1: ATTACTCG; index 2: GTACTGAC


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXIV426617432697/1607.81/
chrXVI344267349717/1341.04/
chrXIII512027514424/1319.32/
chrVII396374401840/1022.53/
chrIV869570871293/1006.21/
chrVII829971838015/944.992/
chrV353451357139/907.076/
chrVII754131756817/791.26/
chrXIII745840747645/782.264/
chrIV12034521205702/741.26/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXVI3442673497173454831341.04/
chrXIII5120275144245131271319.32/
chrXIII7313217331297322121042.97/
chrVII3963744018403996921022.53/
chrIV8695708712938706991006.21/
chrV353451357139355413907.076/
chrXIII745887747645746866801.736/
chrVII754131756817755815791.26/
chrIV120345212057021204668741.26/
chrXI283008286714285079738.213/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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