DNA Damage Atlas

GSM5217296-dDSB_Spo11-myc18_rad50S_tel1Δ_t4_replicate_1_ChIP

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14093037


Source Project ID:   

GSE171042

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 + ZP591


Genotype:   

tel1Δ rad50S


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Protec-seq


Others:   

antibody: anti-myc antibody; index 1: GCCAAT


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVI113619119366/8176.59/
chrI190141199158/6044.54/
chrVII831834834804/4653.82/
chrIV869178871214/4541.2/
chrIV10519591053358/3991.79/
chrVII755046756626/3759.09/
chrVII396363401792/3548.96/
chrXV474370478200/3206.52/
chrX400448405225/3001.64/
chrVIII117792120665/2959.17/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrVII8318348348048337914653.82/
chrIV8691788712148705644541.2/
chrIV1051959105335810527103991.79/
chrVII7550467566267558743759.09/
chrVII3963634017923995583548.96/
chrVIII1177921206651187652959.17/
chrXV6769166784176775222058.84/
chrXV1498991514001508001995.95/
chrXIII5122345143875133371893.61/
chrX6354466421146391961751.79/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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