DNA Damage Atlas

GSM5217298-dDSB_Spo11-myc18_Rec104-FRB-HA3_t4_ChIP

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14093039


Source Project ID:   

GSE171042

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 + ZP591


Genotype:   

Rec104-FRB-HA3 depletion


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Protec-seq


Others:   

antibody: anti-myc antibody; index 1: CGCTCATT; index 2: AGGCGAAG


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVII831945834699/1595.89/
chrVII396689400449/1522.24/
chrXIV429382431258/1434.91/
chrXVI462768464366/1428.67/
chrIV10519961053416/1371.54/
chrX621182623627/1335.49/
chrIV869671871273/1170.93/
chrXV676544678230/1170.21/
chrII649910651727/1151.97/
chrVII197456199965/1099.06/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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