DNA Damage Atlas

GSM5217302-dDSB_Spo11-myc18_Rec104-FRB-HA3_rad50S_t4_ChIP

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14093043


Source Project ID:   

GSE171042

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 + ZP591


Genotype:   

Rec104-FRB-HA3 depletion


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

Protec-seq


Others:   

antibody: anti-myc antibody; index 1: GGATCTGA; index 2: AAGCGGAA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrIV869383871190/1636.82/
chrXIII511983514316/1634.32/
chrXI283598286622/1554.47/
chrIV10514931053393/1480.63/
chrVII754939756531/1402.86/
chrVII271215275527/1174.74/
chrIV929366932579/1170.64/
chrI190606198968/1120.39/
chrVII396345401829/1003.69/
chrV353869356597/938.515/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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