DNA Damage Atlas

GSM5217304-dDSB_Spo11-myc18_Rec104-FRB-HA3_rad50S_t4_5_+_Rapamycin_t4_ChIP

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14093045


Source Project ID:   

GSE171042

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 + ZP591


Treatment:   

Rapamycin


Treatment Dose:   

1ug/mL


Genotype:   

Rec104-FRB-HA3 depletion


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

Protec-seq


Others:   

antibody: anti-myc antibody; index 1: TGATCACG; index 2: CGGAACAA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrIV10515591053411/1563.55/
chrXIII512245514153/1287.31/
chrIV929755932111/1222.67/
chrIV819686828131/1207.1/
chrIV869214871148/1084.31/
chrVII755118756663/1054.97/
chrVII396437401741/1054.01/
chrXVI344423348144/1044.8/
chrI190211197255/1038.59/
chrX620046624222/1032.6/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab