DNA Damage Atlas

GSM5217310-dDSB_Spo11-myc18_rec114-8A_rad50S_t4_ChIP

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14093051


Source Project ID:   

GSE171042

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 + ZP591


Genotype:   

rad50S rec114-8A


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Protec-seq


Others:   

antibody: anti-myc antibody; index 1: CTTGTA


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXVI344923346969/15887.1/
chrIV10519231053417/12105/
chrVII831739835212/8350.91/
chrVI114478119373/7173.85/
chrXV676875678490/6168.55/
chrIV869596871210/6121.87/
chrIV929880932106/5098.84/
chrVII601816605609/4449.04/
chrV353793356613/4444.19/
chrXI283777285812/4380.14/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXVI34492334696934543515887.1/
chrIV10519231053417105273312105/
chrVII8317398352128337338350.91/
chrXV6768756784906775186168.55/
chrIV8695968712108705676121.87/
chrIV9298809321069313625098.84/
chrV3537933566133554424444.19/
chrXI2837772858122851194380.14/
chrVII4109444124654119074334.85/
chrVII3972544011443995154292.8/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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