DNA Damage Atlas

GSM5217330-dDSB_Spo11-myc18_wt_t5_ChIP

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14093071


Source Project ID:   

GSE171042

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 + ZP591


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Protec-seq


Others:   

antibody: anti-myc antibody; index 1: TAATGCGC; index 2: ATAGAGGC


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVI114462118723/5138.86/
chrVII833073834507/4776.63/
chrVII398730400383/3841.29/
chrVIII415881417638/3095.17/
chrXIV429494431509/3086.19/
chrXIII358930361270/2847.48/
chrXV676707678165/2797.74/
chrIV10518841053414/2707.53/
chrVII602111604010/2705.42/
chrIV689940691601/2285.8/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrVI1144621187231169615138.86/
chrVII8331038345078337994878.23/
chrVII3988354003433997504206.9/
chrII6501006516186508553190.99/
chrXV6768726781656775933152.07/
chrXIV4295364315094304503151.67/
chrVIII4158814176384168683095.17/
chrIV1052020105339810526933003.51/
chrXIII3589303612703603542847.48/
chrVII6021776040046033532811.68/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab