DNA Damage Atlas


GSM5217332-dDSB_Spo11-myc18_wt_t5_replicate_1_ChIP




Basic Information

Manual

Sample ID:   

SRR14093073


Source Project ID:   

GSE171042

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 + ZP591


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Protec-seq


Others:   

antibody: anti-myc antibody; index 1: TAATGCGC; index 2: TATAGCCT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVII398835400343/4073.58/
chrVII833103834688/3918.47/
chrVI113747118745/3559.22/
chrXV676872678190/2667.62/
chrII650100651635/2610.08/
chrXIV429536431513/2573.3/
chrIV10520201053398/2372.7/
chrVII602177604004/2235.49/
chrI191019197389/1976.21/
chrXII575635578236/1930.97/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrVII8331038345078337894420.25/
chrVI1144621187231170094164.09/
chrVII3988354003433997234073.58/
chrXV6768726781656775972718.83/
chrII6501006516186509732639.31/
chrXIV4295364315094304472578.51/
chrVIII4158814176384169122501.6/
chrIV1052020105339810527682372.7/
chrXIII3589303612703603542321.13/
chrVII6021776040046033502235.49/
Download the Full Merged Peak List



Motif Analysis

Manual





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