DNA Damage Atlas

GSM5221169-GLOE_HCT116_CAD-KO_20m_R1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14119089


Source Project ID:   

GSE171242

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

post-IR


Treatment Time:   

20mins


Treatment Dose:   

8Gy


Genotype:   

CAD-/-


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

GLOE-Seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM034457253265-
chrM159481670216105120942-
chr1615964536159647371596472180023.3-
chr75521422555214544552144068236.21-
chrM97891011099394491.68-
chrM1016510483103713990.07-
chr41890533831890535831890533992428.18+
chr9360051373600533836005154734.304+
chr1238147682238147882238147699710.202+
chr12253625162536280325362688696.751-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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