DNA Damage Atlas


GSM5221172-GLOE_HCT116_CAD-KO_24h_R1




Basic Information

Manual

Sample ID:   

SRR14119092


Source Project ID:   

GSE171242

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

post-IR


Treatment Time:   

24hrs


Treatment Dose:   

8Gy


Genotype:   

CAD-/-


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

GLOE-Seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM034457387577-
chrM159471670216106204041-
chr1615964536159647371596472174127.5-
chrM13623138231367034569.5+
chr75521422555214544552144069545.45-
chrM980510100100527813.35-
chrM1021210483103717247.51-
chr41890533831890535831890533992579.27+
chr142301648223016682230166321152.93-
chr9360051373600533836005154807.113+
Download the Full Peak List



Motif Analysis

Manual





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