DNA Damage Atlas

GSM5260460-RbKO_100_Jperm2_UVC_Replicate1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR14301950


Source Project ID:   

GSE173126

Cell Type:   

IMR-90


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

100 J/m2


Genotype:   

RB1 KO


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

CPD-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA272712893728660272.339+
rDNA313273270532014234.944+
rDNA231062393423668232.8+
rDNA133811451514058144.337+
rDNA19284200501934945.6922+
rDNA38181388763849416.6633-
chr852020406520207105202040614.3915+
chr664850062648503576485006713.9582+
chr471206028712063257120629612.1312-
chr1332294749322951703229490811.6146+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA282482883728660723.372+
rDNA318143260532014320.906+
rDNA139531451514058317.765+
rDNA231082383423668243.459+
rDNA192841951319349124.603+
chrUn_gl00022420632520234624.0526+
rDNA38281388493849423.0575-
chr1115260632152608491526083115.0356-
chr7_gl000195_random24072836261414.8623-
chr971215437121824712181613.0442-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab