DNA Damage Atlas


GSM5260461-RbKO_100_Jperm2_UVC_Replicate2




Basic Information

Manual

Sample ID:   

SRR14301951


Source Project ID:   

GSE173126

Cell Type:   

IMR-90


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

100 J/m2


Genotype:   

RB1 KO


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

CPD-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA282482883728660726.675+
chrM2745713666371.684-
rDNA139531452614065341.722+
rDNA318143260532014287.177+
rDNA231082383423668221.766+
rDNA313233155931336151.978+
rDNA19284195131934998.615+
rDNA38281388493849525.7261-
chrUn_gl00022420632520225125.5797-
chr2042047393420475724204755516.3267-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA282482883728660723.372+
rDNA318143260532014320.906+
rDNA139531451514065317.765+
rDNA231082383423668243.459+
rDNA313273155931336169.906+
rDNA192841951319349124.603+
chrUn_gl00022420632520225124.0526-
rDNA38281388493849523.0575-
chr1115260632152608491526076215.0356+
chr7_gl000195_random24072836261414.8623-
Download the Full Merged Peak List



Motif Analysis

Manual





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